A spatially-aware cell clustering algorithm is provided with cluster significance assessment. It comprises four key modules: spatially-aware cell-gene co-embedding, cell clustering, signature gene identification, and cluster significant assessment. More details can be referred to Peng Xie, et al. (2025) <doi:10.1016/j.cell.2025.05.035>.
| Version: | 0.2.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | Rcpp (≥ 1.0.10),furrr,future,ggplot2,irlba,DR.SC,PRECAST,ProFAST,Matrix,ade4,progress,pbapply,dplyr,Seurat, stats, utils |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | knitr,rmarkdown,scater,ggrepel,RANN, grDevices |
| Published: | 2025-12-14 |
| DOI: | 10.32614/CRAN.package.coFAST |
| Author: | Wei Liu [aut, cre], Xiao Zhang [aut], Yi Yang [aut], Peng Xie [aut], Chengqi Lin [aut], Jin Liu [aut] |
| Maintainer: | Wei Liu <liuweideng at gmail.com> |
| BugReports: | https://github.com/feiyoung/coFAST/issues |
| License: | GPL-3 |
| URL: | https://github.com/feiyoung/coFAST |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | coFAST results |