Movatterモバイル変換

hdme 0.6.0

• Changed ggplot code to avoid using deprecated functions.
• Reduced test time by changing tests.dec
• Fixed a bug in corrected_lasso and cv_corrected lasso causing thealgorithm to not converge, without issuing a warning. Thanks to YuxiaoRuoyao for discovering the error (issue 47).

hdme 0.5.1

• Colorblind friendly plots in vignette. Thanks to Andre Cruz forsuggesting.
• Removed C++11 flags from Makevars and Makevars.win.

hdme 0.5.0

• Fixed bug in stopping condition for projected gradient descent.Thanks to Michael Pollmann for discovering this.
• Fixed numerical overflow issue which happened for corrected lassowith Poisson regression.

hdme 0.4.0

• Fixes a bug incorrected_lasso() with thefamily = "poisson" option. Thanks to Huang Jun fordiscovering this.
• Corrected a logical error in the examples, in which the variance ofthe measurement errors was supplied as the standard error.

hdme 0.3.4

• Changed to Authors(at)R notation in DESCRIPTION.

hdme 0.3.3

• Package ‘flare’ removed from suggested dependencies.

hdme 0.3.2

• Changed used ofcoef function fromglmnet,due to a breaking change inglmnet.

hdme 0.3.1.9000

• New functioncv_gds which computes cross-validatedgeneralized Dantzig selector.

hdme 0.3.1

• Added case weighting togds andgmus.

hdme 0.3.0

• This release contains all changes since 0.2.3, as listed under theheadings below.

hdme 0.2.3.9001

S3 methods

• Added coef methodscoef.corrected_lasso,coef.gds,coef.gmu_lasso, andcoef.gmus.
• Added print methodsprint.corrected_lasso,print.cv_corrected_lasso,print.gds,print.gmu_lasso, andprint.gmus.
• Improvedplot.corrected_lasso to also handle the caseof a single regularization parameter.

Dependencies

• Figured out how to installRglpk on travis CI, so nowthis package is back inImports, andlpSolveAPI is no longer used.

hdme 0.2.3.9000

• It turns out that travis CI is not able to installRglpk. Hence, for the development versionRglpk is back inSuggests, together withlpSolveAPI.

hdme 0.2.3

• AddedRglpk back toImports andremovedlpSolveAPI, as the latest version ofRglpk passes all tests on CRAN, including osX.
• Updated vignette.
• Cleaned up documentation, hiding internal functions from theindex.
• Created unit tests.

hdme 0.2.2

Fixed random number seed issue which caused test to fail inR-devel.

hdme 0.2.1

Internal fix tofit_corrected_lasso andcv_corrected_lasso. Got rid of duplicated code by callingthe functionset_radius.

hdme 0.2.0

SinceRglpk does not install automatically on macOS,this package was moved fromImports toSuggests. In addition,lpSolveAPI wasadded toSuggests. This means that the package shouldbuild also on systems that do not haveRglpk, in particularthe versions of macOS on CRAN.

The changes involved adding an optional linear solver fromlpSolveAPI in the functionmusalgorithm().

hdme 0.1.1.9002

Added aplot.gds function, which plots the coefficientsestimated byfit_gds.

hdme 0.1.1.9001

Internal adjustment, which removed importing of external packagesinto the namespace, and instead specified the functions explicitly using::.

hdme 0.1.1

tidyverse has been removed fromSuggests fieldDESCRIPTION.dplyr andtidyr have been added instead.Similarly,library(tidyverse) in the vignette has beenreplaced bylibrary(dplyr),library(tidyr),andlibrary(ggplot2).

hdme 0.1.0

hdme is now on CRAN.