Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees. Provides methods to 1) reconstruct unmutated ancestral sequences, 2) build B cell phylogenetic trees using multiple methods, 3) visualize trees with metadata at the tips, 4) reconstruct intermediate sequences, 5) detect biased ancestor-descendant relationships among metadata types Workflow examples available at documentation site (see URL). Citations: Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>, Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.
| Version: | 2.4.0 |
| Depends: | R (≥ 4.0),ggplot2 (≥ 3.4.0) |
| Imports: | airr,alakazam (≥ 1.1.0),ape (≥ 5.6),Biostrings,dplyr (≥1.0),ggtree, graphics,gridExtra,markdown, methods,phangorn (≥ 2.7.1),phylotate,RColorBrewer,rlang,shazam (≥ 1.1.1), stats,stringr,tidyselect,tidyr, utils,treeio |
| Suggests: | knitr,rmarkdown,testthat,pwalign,BiocManager |
| Published: | 2025-10-14 |
| DOI: | 10.32614/CRAN.package.dowser |
| Author: | Kenneth Hoehn [aut, cre], Cole Jensen [aut], Jessie Fielding [aut], Hunter Melton [aut], Susanna Marquez [ctb], Jason Vander Heiden [ctb], Steven Kleinstein [aut, cph] |
| Maintainer: | Kenneth Hoehn <kenneth.b.hoehn at dartmouth.edu> |
| BugReports: | https://github.com/immcantation/dowser/issues |
| License: | AGPL-3 |
| URL: | https://dowser.readthedocs.io |
| NeedsCompilation: | no |
| Citation: | dowser citation info |
| Materials: | README,NEWS |
| CRAN checks: | dowser results |
| Package source: | dowser_2.4.0.tar.gz |
| Windows binaries: | r-devel:dowser_2.4.0.zip, r-release:dowser_2.4.0.zip, r-oldrel:dowser_2.4.0.zip |
| macOS binaries: | r-release (arm64):dowser_2.4.0.tgz, r-oldrel (arm64):dowser_2.4.0.tgz, r-release (x86_64):dowser_2.4.0.tgz, r-oldrel (x86_64):dowser_2.3.tgz |
| Old sources: | dowser archive |
Please use the canonical formhttps://CRAN.R-project.org/package=dowserto link to this page.