Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>, and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157> for pairs of binary trees.
| Version: | 1.2.7 |
| Depends: | R (≥ 3.5.0),TreeTools (≥ 1.4.0) |
| Imports: | ape,PlotTools,Rdpack (≥ 0.7),Ternary (≥ 1.0),viridisLite |
| LinkingTo: | Rcpp |
| Suggests: | bookdown,knitr,phangorn,Rcpp,rmarkdown,testthat,usethis,vdiffr |
| Published: | 2024-10-31 |
| DOI: | 10.32614/CRAN.package.Quartet |
| Author: | Martin R. Smith [aut, cre, cph], Andreas Sand [ant], Gerth Stølting Brodal [ant], Rolf Fagerberg [ant], Thomas Mailund [ant], Christian N. S. Pedersen [ant], Jens Johansen [ant], Morten K. Holt [ant] |
| Maintainer: | Martin R. Smith <martin.smith at durham.ac.uk> |
| BugReports: | https://github.com/ms609/Quartet/issues/ |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | Incorporates code modified from tqDist<doi:10.1093/bioinformatics/btu157>. |
| URL: | https://ms609.github.io/Quartet/,https://github.com/ms609/Quartet/ |
| NeedsCompilation: | yes |
| Language: | en-GB |
| Citation: | Quartet citation info |
| Materials: | README,NEWS |
| In views: | Phylogenetics |
| CRAN checks: | Quartet results |