Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) <doi:10.1186/s13059-014-0550-8>. The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.
| Version: | 1.0.3 |
| Depends: | R (≥ 3.5.0),readr (≥ 2.1.2),dplyr (≥ 1.1.0),enrichR (≥3.4) |
| Imports: | ape,ComplexHeatmap,DESeq2,dichromat,ggplot2,ggrepel, grDevices,GSVA,msigdbr,openxlsx,purrr,RColorBrewer,reshape2, stats,stringr,SummarizedExperiment,textshape,tibble,tidyr,tidyselect, utils |
| Suggests: | knitr,rlang,rmarkdown |
| Published: | 2025-08-19 |
| DOI: | 10.32614/CRAN.package.autoGO |
| Author: | Isabella Grassucci [aut], Eleonora Sperandio [aut], Fabio Ticconi [cre], Alice Massacci [aut], Lorenzo D'Ambrosio [aut], Matteo Pallocca [aut] |
| Maintainer: | Fabio Ticconi <fabio.ticconi at gmail.com> |
| BugReports: | https://github.com/mpallocc/auto-go/issues |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | no |
| CRAN checks: | autoGO results |