epizootic: Spatially Explicit Population Models of Disease Transmission inWildlife
This extension of the pattern-oriented modeling framework of the 'poems' package provides a collection of modules and functions customized for modeling disease transmission on a population scale in a spatiotemporally explicit manner. This includes seasonal time steps, dispersal functions that track disease state of dispersers, results objects that store disease states, and a population simulator that includes disease dynamics.
| Version: | 2.0.0 |
| Depends: | R (≥ 4.3.0) |
| Imports: | purrr (≥ 1.0.0),dplyr (≥ 1.1.3),tibble (≥ 3.2.1),R6 (≥2.5.1),cli (≥ 3.6.1),raster (≥ 3.6),qs2,poems (≥ 1.1.0),doParallel (≥ 1.0.16),foreach (≥ 1.5.1),Rcpp |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | testthat (≥ 3.0.0),geosphere (≥ 1.5),knitr (≥ 1.17),rmarkdown (≥ 1.6) |
| Published: | 2025-11-12 |
| DOI: | 10.32614/CRAN.package.epizootic |
| Author: | July Pilowsky [aut, cre], National Science Foundation Biology Integration Institute 2213854 [fnd] |
| Maintainer: | July Pilowsky <pilowskyj at caryinstitute.org> |
| BugReports: | https://github.com/viralemergence/epizootic/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/viralemergence/epizootic |
| NeedsCompilation: | yes |
| Materials: | README,NEWS |
| CRAN checks: | epizootic results |
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