ribd: Pedigree-based Relatedness Coefficients
Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, which enables construction of any given kappa coefficients, as described in Vigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition to the standard coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients, multi-person coefficients and two-locus coefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are available through the online app 'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022) <doi:10.1186/s12859-022-04759-y>.
| Version: | 1.7.1 |
| Depends: | pedtools (≥ 2.6.0), R (≥ 4.1.0) |
| Imports: | glue,kinship2,slam |
| Suggests: | ggplot2,ggrepel,plotly,spelling,testthat |
| Published: | 2025-02-08 |
| DOI: | 10.32614/CRAN.package.ribd |
| Author: | Magnus Dehli Vigeland [aut, cre] |
| Maintainer: | Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no> |
| License: | GPL-3 |
| URL: | https://github.com/magnusdv/ribd,https://magnusdv.github.io/pedsuite/ |
| NeedsCompilation: | no |
| Language: | en-GB |
| Citation: | ribd citation info |
| Materials: | README,NEWS |
| CRAN checks: | ribd results |
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