Deconvolution of mixed tumour profiles into normal and cancer for each patient, using the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires mixed tumour profiles and a set of unmatched "basis" normal profiles.
| Version: | 1.1.3 |
| Depends: | R (≥ 3.1.1) |
| Imports: | Rcpp (≥ 0.11.3), stats,futile.logger |
| LinkingTo: | Rcpp,RcppEigen (≥ 0.3.2.2.0) |
| Suggests: | knitr |
| Published: | 2019-05-11 |
| DOI: | 10.32614/CRAN.package.ISOpureR |
| Author: | Gerald Quon [aut], Catalina V Anghel [aut, trl], Syed Haider [aut], Francis Nguyen [aut], Amit G Deshwar [aut], Quaid D Morris [aut], Paul C Boutros [aut, cre] |
| Maintainer: | Paul C Boutros <pboutros at mednet.ucla.edu> |
| License: | GPL-2 |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | ISOpureR results |
| Reference manual: | ISOpureR.html ,ISOpureR.pdf |
| Vignettes: | Guide for using ISOpureR (source) |
| Package source: | ISOpureR_1.1.3.tar.gz |
| Windows binaries: | r-devel:ISOpureR_1.1.3.zip, r-release:ISOpureR_1.1.3.zip, r-oldrel:ISOpureR_1.1.3.zip |
| macOS binaries: | r-release (arm64):ISOpureR_1.1.3.tgz, r-oldrel (arm64):ISOpureR_1.1.3.tgz, r-release (x86_64):ISOpureR_1.1.3.tgz, r-oldrel (x86_64):ISOpureR_1.1.3.tgz |
| Old sources: | ISOpureR archive |
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