ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for OmicsData
Inspired by the classic 'RSA', we developed the improved 'Generalized Reporter Score-based Analysis (GRSA)' method, implemented in the R package 'ReporterScore', along with comprehensive visualization methods and pathway databases. 'GRSA' is a threshold-free method that works well with all types of biomedical features, such as genes, chemical compounds, and microbial species. Importantly, the 'GRSA' supports multi-group and longitudinal experimental designs, because of the included multi-group-compatible statistical methods.
| Version: | 0.1.9 |
| Depends: | R (≥ 4.2.0) |
| Imports: | magrittr,dplyr, stats,ggplot2 (≥ 3.2.0),pcutils (≥0.2.5), utils,scales,ggnewscale,ggrepel,reshape2,stringr,foreach |
| Suggests: | knitr,rmarkdown,plyr,e1071,factoextra,snow,doSNOW,pheatmap,readr,R.utils,KEGGREST,clusterProfiler,enrichplot,pathview,GSA,vegan,MetaNet,igraph,ggraph,PADOG,safe,rSEA,GSVA |
| Published: | 2024-11-28 |
| DOI: | 10.32614/CRAN.package.ReporterScore |
| Author: | Chen Peng [aut, cre] |
| Maintainer: | Chen Peng <pengchen2001 at zju.edu.cn> |
| BugReports: | https://github.com/Asa12138/ReporterScore/issues |
| License: | GPL-3 |
| URL: | https://github.com/Asa12138/ReporterScore |
| NeedsCompilation: | no |
| Citation: | ReporterScore citation info |
| Materials: | NEWS |
| CRAN checks: | ReporterScore results |
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