tracerer: Tracer from R
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool to parse and analyze the files generated by 'BEAST2'. This package provides a way to parse and analyze 'BEAST2' input files without active user input, but using R function calls instead.
| Version: | 2.2.3 |
| Imports: | jsonlite,Rcpp,testit |
| LinkingTo: | Rcpp |
| Suggests: | ape,ggplot2,hunspell,knitr,markdown,phangorn,rappdirs,rbenchmark,reshape2,rmarkdown,spelling,stringr,testthat (≥ 2.1.0) |
| Published: | 2023-09-27 |
| DOI: | 10.32614/CRAN.package.tracerer |
| Author: | Richèl J.C. Bilderbeek [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209) |
| Maintainer: | Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> |
| BugReports: | https://github.com/ropensci/tracerer/issues |
| License: | GPL-3 |
| URL: | https://docs.ropensci.org/tracerer/ (website)https://github.com/ropensci/tracerer/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | tracerer citation info |
| In views: | Phylogenetics |
| CRAN checks: | tracerer results |
Documentation:
| Reference manual: | tracerer.html ,tracerer.pdf |
| Vignettes: | tracerer versus Tracer demo (source,R code) |
Downloads:
| Package source: | tracerer_2.2.3.tar.gz |
| Windows binaries: | r-devel:tracerer_2.2.3.zip, r-release:tracerer_2.2.3.zip, r-oldrel:tracerer_2.2.3.zip |
| macOS binaries: | r-release (arm64):tracerer_2.2.3.tgz, r-oldrel (arm64):tracerer_2.2.3.tgz, r-release (x86_64):tracerer_2.2.3.tgz, r-oldrel (x86_64):tracerer_2.2.3.tgz |
| Old sources: | tracerer archive |
Reverse dependencies:
| Reverse depends: | babette |
| Reverse imports: | nodeSub |
| Reverse suggests: | beastier,mauricer,mcbette |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=tracererto link to this page.