gkmSVM: Gapped-Kmer Support Vector Machine
Imports the 'gkmSVM' v2.0 functionalities into R <https://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages <https://bioconductor.org>.
| Version: | 0.83.0 |
| Imports: | kernlab,seqinr, utils,ROCR,Rcpp, grDevices, graphics, stats |
| LinkingTo: | Rcpp |
| Suggests: | rtracklayer,GenomicRanges,BSgenome,BSgenome.Hsapiens.UCSC.hg18.masked,BSgenome.Hsapiens.UCSC.hg19.masked,BiocGenerics,Biostrings,GenomeInfoDb,IRanges,S4Vectors |
| Published: | 2023-08-20 |
| DOI: | 10.32614/CRAN.package.gkmSVM |
| Author: | Mahmoud Ghandi |
| Maintainer: | Mike Beer <mbeer at jhu.edu> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | gkmSVM results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=gkmSVMto link to this page.