Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | abind,doParallel,foreach, grDevices, graphics,Hmisc,knitr,nlme,RColorBrewer,Rcpp (≥ 0.12.19),reshape2, stats, utils |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | igraph, mappoly (≥ 0.3.0),polymapR,rmarkdown |
| Published: | 2024-01-09 |
| DOI: | 10.32614/CRAN.package.polyqtlR |
| Author: | Peter Bourke [aut, cre], Christine Hackett [ctb], Chris Maliepaard [ctb], Geert van Geest [ctb], Roeland Voorrips [ctb], Johan Willemsen [ctb] |
| Maintainer: | Peter Bourke <pbourkey at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Citation: | polyqtlR citation info |
| In views: | Agriculture |
| CRAN checks: | polyqtlR results |