Movatterモバイル変換

NEWS for the Gmisc package

Changes for 3.0.4

• Update for new CRAN policy
• Improved cpp code for bezier arrows

Changes for 3.0.3

• Fixed bug in getSvdMostInfluential with bad names appearing in graphdue to bad reference, thanks Felipe (see issue #66)

Changes for 3.0.1

• FixedpathJoin for vector inputs
• Addeddifftime as numeric togetDescriptionStatsBy

Changes for 3.0.0

• BREAKING: The input parameters have changed forgetDescriptionStatsBy and dropped old deprecated parameterconversion:
  • show_missing_digits ->show_missing.digits
  • show_missing ->useNA
  • sig.limit ->statistics.sig_lim
  • two_dec.limit ->statistics.two_dec_lim
• Fixed bug ingetDescriptionStatsBy when providing acharacter input
• MadegetDescriptionStatsBy S3 aware withtidyselect pattern for generating tables.
• TheyamlDump can now take a character string and assumethat is a json that needs conversion
• Addedset_column_labels andset_column_units for usingdplyr syntax forHmisc::label andHmisc::units operations.
• The units column ingetDescrptionStatsBy can now have acustom name (also changed default name to “Units”)
• Changed addBoxClr to addBoxStyle for Transition-class (minorbreaking change)

Changes for 2.1.0

• getSvdMostInfluential now returns the data needed forplotting
• added fontsize dependent padding toboxGrob

Changes for 2.0.2

• Minor RCPP changes

Changes for 2.0.1

• Minor CRAN check fixes

Changes for 2.0.0

• BREAKING: ThemergeList merges vectorsinto vectors instead of assuming that they should be bound as amatrix

Changes for 1.11.0

• Fix for adjustment in box justification, thanks Carl Suster
• Fix for incorrectboxPropGrob height calculation, badhandling of missing arguments and ignored gpar arguments (issue#46)
• Slightly changed color scheme forboxGrobs
• AddedmoveBox for movingboxGrobobjects
• AddedalignVertical andalignHorizontalfor aligningboxGrob objects
• AddedspreadVertival andspreadHorizontalfor spreadingboxGrob objects over theviewport
• Styling ofhtmlTable removed due to the 2.0 api change,nbow. the css.rgroup should be set using sethtmlTable::setHtmlTableTheme or by passing theoutput throughhtmlTable::addHtmlTableStyle.
• The boxes now accept language input, thanks Carl Suster

Changes for 1.10.0

• AddedyamlDump for quick object review
• AddedpathJoin for joining paths without worrying abouttrailing ‘/’
• Addedtime2spanTxt for printing time spandescriptor

Changes for 1.9.1

• Fixed new handling of data.framestringsAsFactors innext R release

Changes for 1.9.0

• Added id as a parameter to theTranstion-class
• Fixed bad no. ofpopViewport() not adequately leavingthe transitionClass viewport tree
• Fixed badviewport naming inTransition-class that was creating a conflict with multipleplots

Changes for 1.8.1

• Fixed cran requirement whereclass(x) != class(y) couldbe of length > 1

Changes for 1.8

• Addeddigits.nonzero for allowing values with extradigits where values are close to 0
• Changedsprintf totxtRound for many ofthe descriptors
• Fixed vignette names for CRAN
• Fixed bug inretrieve

Changes for 1.7

• Expressions are now allowed inboxGrob (Thanks AlanHaynes)
• Addedlodash similar functionsretrieve andhas

Changes for 1.6.4

• Removed changed constant for STRICT_R_HEADERS compliance

Changes for 1.6.3

• Fixed minor issue related to new CPP error

Changes for 1.6.1

• Removed test for CRAN compliance
• Changed abs to fabs inbezierArrowFn’s c++ code

Changes for 1.6

• Added skip_shadows toTransition-class

Changes for 1.4.3

• Fixes non-existing values in different by-groups (issue #24)

Changes for 1.4.2

• Added box functions between and coords
• Added moreTransition options for arrows
• Added default options forTransition,boxGrob andboxGrobProp

Changes for 1.4.1

• Fixed merge with master externaldescGetMissing (ThanksPeter)

Changes for 1.4

• Added grid grobs for creating boxes and connecting these withlines
• Added checkmate for argument checking

Changes for 1.3.2

• Fixed bug when providinggetDescriptionStatsBy withcustom function
• Added ability add alternative column instead of the p-valuecolumn

Changes for 1.3.1

• Fixed use_unit issue #16
• Fixed bug in vignette
• Added R-version dependency

Changes for 1.3

• TheTransition-class can now handle non-square matrixinput
• The total column is now also passed through thetxtIntfunction
• Fixed header_count bug ingetDescriptionStatsBy -thanks rvlevitin (iss#13)

Changes for 1.2

• Fixed the naming of proportions ingetDescriptionStatsBy
• If a variable has units set it can now be added into the row name ingetDescriptionStatsBy
• Merged with the Grmd-package allowing direct access to thedocx_document()
• Prepared for stricter requirements for R 3.3

Changes for 1.1

• Created theTransition class that can handle multipletransitions in contrast totransitionPlot
• ThebezierArrowGradient has a simpler handling of thegradient proportion
• The bezier arrows have been rewritten with a > 20x speedincrease
• ThegetDescriptionStatsBy function is now accompaniedbymergeDesc that takes care of merging everything into onetable
• Added ability to customize statistics forgetDescriptionStatsBy
• transitionPlot: The color_bar_labels are nowautomatically extracted from the transition_flow input
• transitionPlot: Fixed bug so that the end viewport isthe root
• transitionPlot: Fixed grid arrow bug
• transitionPlot: When using 3D matrices and two colorsthere should only be a colorbar when used with gradient arrows
• transitionPlot: If line width is smaller than theminimum width it is now set to 0

Changes for 1.0

• htmlTable and some of the formatters have now moved tothehtmlTable package
• forestplot2 has now moved to theforestplot package
• added themergeDesc in order to merge lists fromgetDescriptionStatsBy for
• All functions default tohtml = TRUE instead ofFALSE
• show_missing is nowuseNA in order tomatch thetable() call handling of missing
• Fixed a few bugs

Changes for 0.6.8

• Applied the DRY-documentation principle

Changes for 0.6.7

• Added an interactive() check before using the viewer
• Minor adjustments to thehtmlTable handling of no-blankspaces ( )
• htmlTable now remember the … argument and passes it onto the print.htmlTable() and cat()
• Added figCapNo and associated caption function for numbering figurecaptions
• Improved documentation

Changes for 0.6.6

• Improved thehtmlTable viewer handling (thanks AdamSmith)

Changes for 0.6.5

• Changed the getDescriptionsBy example to work with thehtmlTable() instead of the Hmisc::latex()
• Fixed getDescriptionsBy bug - the Total column failed when specifiedto be last - thanks Alexandre Vivot
• Added example for side-by side plotting forforestplot2
• As of 0.98.932 the knitr package isn’t loaded, instead the metadataor device options indicates that it is knitting
• htmlTable bug: The function can now handle matriceswithout column names
• htmlTable bug: The function deletes and warns whenn.rgroup/n.cgroup < 1

Changes for 0.6.4

• Bug fix for alt_col not respecting missing rgroup - added also asimple matrix output test
• Added visual tests forhtmlTable and moved one of theexamples there
• Added tableCSSclass option forhtmlTable - thanksjphiplip

Changes for 0.6.3

• Changed versioning to a 3-digit system as suggested by Yihui Xiehttp://yihui.name/en/2013/06/r-package-versioning/
• Added alt_col for coloring the rows of thehtmlTablergroups - thanks raredd

Changes for 0.6.2.3

• Roxygen2 v 4.0.0 upgrade + other doc upgrades
• Percentages are now default without space between the number and the%-sign in order to better comply with English language standards

Changes for 0.6.2.2

• transitionPlot - fixed arrow size and empty boxes
• outputInt now defaults to the ‘,’ formatting according to theEnglish language. It also has no-breaking space if html option is set.It can also handle complex vector/matrix input.
• describeMean now allows for custom plus minus sign
• describe* now use the outputInt with the default englishsettings
• Minor fix for the print.htmlTable

Changes for 0.6.2.1

• bezierArrowSmplGradient changed name to justbezierArrowGradient
• Added visual tests and debugged thebezierArrowGradient/transitionPlots
• Externalized all internal functions of the transitionplot
• Added proportions for the transitionplot
• Managed thanks to Baptiste Auguié help on Stack Overflow I know nowhow to calculate the height of axisGrobs - useful both in theforestplot2 and thetransitionPlotfunctions
• Fixed the adjustment of the xlabel, the lineheight argument, theviewports for theforestplot2 function
• Simplified thetransitionPlot defaults
• Fixed a gradient bug inbezierArrowGradient

Changes for 0.6.2.0

• Added the viewer forhtmlTable allowing for directvisualisation in RStudio of the tables. Outside RStudio theutils::browseURL is used.
• htmlTable added table spanner functionality, someman-page update, removed the default NULL arguments in favor of themissing() funciton, and a few minor bugfixes.

Changes for 0.6.1.1

• The bezierArrowSmpl now uses “mm” internally instead of the default“npc” - this improves the rendering as the “npc” is dependent on theaxis. A few adjustments to arrow functions were also added.
• Bugfixes for the bezierArrowSmplGradient.
• Bugfixed missing data for getDescriptionStats and generated atest-file in order to check most combinations that they work
• Fixed the legend-bug forforestplot2 when usingpoints

Changes for 0.6.1.0

• Added legend markers option for theforestplot2function

Changes for 0.6.0.2

• Fixed ticks forforestplot2 - theprFpGetGraphTicksAndClips used the exp() for regular values.
• Cleaned up some of the code for the fpDrawXXXCI functions

Changes for 0.6.0.1

• Changed depends and imports for the package

Changes for 0.6.0.0

• For LibreOffice compatibilityhtmlTable now includescaption inside the table when compatibility=‘LibreOffice’
• Split the package to exclude regression functions, these are now inthe Greg package
• Added title and label options totransitionPlot
• Added a size-autofit for thetransitionPlot text

Changes for 0.5.8.2

• htmlTable caused too large colspans when cgroup wasset

Changes for 0.5.8.1

• Bugfixes for printC&A and getDesc.
• Added a pvalueFormatter
• Fixed Intercept bug for get/printCrudeAndAdjusted - didn’t includethe intercept term

Changes for 0.5.8.0

• Added toforestplot2 ability create customly drawnconfidence intervals/boxes
• Generated diamond, circle and point custom draw functions forforestplot2
• Addedforestplot2 compatibility for the summary
• Minor bugfixes behind the scenes
• Fixed issue with getCrudeAndAdjustedModelData mixing up rows for rmsobjects

Changes for 0.5.7.11

• Added tfoot option to thehtmlTable function
• Switched to the proper caption-align forhtmlTable
• Added options forhtmlTable() where you now can formatthe table counter text and change to Arabic numerals.
• Bug: changed just to align for printCrudeAndAdjustedModel()

Changes for 0.5.7.10

• Switched the order in the multi-line forestplot for the legend

Changes for 0.5.7.9

• Bugfix for getTics so that it can handle small spans < .5

Changes for 0.5.7.8

• Bugfix forforestplot2 with headers

Changes for 0.5.7.7

• Added title forforestplot2
• Fixed the margins forforestplot2

Changes for 0.5.7.6

• Added more legend border and fill options to theforestplot2
• Added the legend.title option in theforestplot2
• Fixed the auto-sizing of the area for theforestplot2
• Rows/elements with NA are now not included in the zero-line as theyare considered to be headers

Changes for 0.5.7.5

• Added more legend options to theforestplot2
• Minor changes to simleRmsAnova

Changes for 0.5.7.4

• Added some debugging info for thegetDescriptionStatsBywith more detailed errors when unit/total columns don’t match

Changes for 0.5.7.4

• Externalized many of theforestplot2 functions andadded the option of having a set line height
• Added new_page option for grid-based plots
• Updated the simpleRmsAnova function

Changes for 0.5.7.3

• Removed the plot.new() from transitionplot, this is in order toallow splitting plots, adding it to a viewport etc.

Changes for 0.5.7.2

• Added the lineheight option forforestplot2
• Fixed the R CMD Check –as-cran to run without any objections
• Updated dependencies

Changes for 0.5.7.1

• Fixed rownames in printCrudeAndAdjusted
• Changed printCrudeAndAdjusted to return a matrix subclass instead ofimmediately printing
• Ran through som Pkg-check and hopefully cleared out some bugs

Changes for 0.5.7.0

• getCrudeAndAdjusted is now an S3 method that has a default methodand a method for rms objects. The rms relies on rms:::summaryrms andreturns a matrix that is pruned and used for the situation.
• printCrudeAndAdjusted has externalized a lot of its functions andhandling of the new rms getCrudeAndAdjusted output
• printCrudeAndAdjusted now ignores any interaction variables

Changes for 0.5.6.1

• forestplot2 fix so that it properly handles data.framesas arguments
• printCrudeAndAdjustedModel has a better handling of the groupsargument
• Improved import to importFrom

Changes for 0.5.6.0

• Theforestplot2 is updated - the widths are nowrelative to the window size, there is a margin option, and many of theinside functions have moved to helpers outside. Also fixed the alignmentof the summary label to work better.
• Fixed a minor bug for cgroup without rowlabels
• Added default_ref for bothgetDescriptionStatsBy anddescribeProp function.
• The percentage sign ingetDescriptionStatsBy,describProp and describeFactors is now optional.
• A minor bug fix for cgroup.just for thehtmlTablefunction

Changes for 0.5.4.5

• Minor fix to rownames inhtmlTable… again.
• Had to remove the “terms” option from the plotHR rms:::cph()alternative as it did caused an error ** The error seems to stem frompredictrms() where the Adjto function deletes the adjto output in: **adjto <- if (int.pres) ** model.matrix(Terms.ns, adjto)[, -1, drop =FALSE] ** I will have to look into it one day…

Changes for 0.5.4.4

• Fixed a rowname problem forhtmlTable
• Changed the rowlabel.pos to be by default at the bottom, seems morenatural with multi-layered tables.

Changes for 0.5.4.3

• Fixed a caption problem forhtmlTable

Changes for 0.5.4.2

• bezierArrowSmpl needed a color for the arrow line as it turned blackby default. The line was added to fix the anti-aliasing issue.
• Changed CSS-defaults for groups when using the functionprintCrudeAndAdjusted

Changes for 0.5.4.2

• Minor regular expression fix for printCrudeAndAdjusted for theaddref. function
• Minor fix for cgroup.just as this was affected by the previousupdate
• Fixed thehtmlTable cgroup.just issue
• ThehtmlTable is now rendering correct w3c-validatedcode

Changes for 0.5.4.1

• Minor improvement to thehtmlTable function with alignnow accepting vectors
• Added multiline cgroup alternative

Changes for 0.5.4.0

• Added a robust alternative for rms ols regressions that now can usethe sandwich package

Changes for 0.5.3.5

• AddedmergeLists() function for merging multiplelists

Changes for 0.5.3.4

• New options for plotHR

Changes for 0.5.3.3

• Minor fixes to the bezier arrows
• Update fortransitionPlot to avoid overlappingbackground arrows

Changes for 0.5.3.2

• Thank you Adam Van Iwaarden for fixing thehtmlTablealignment and a few bugs!
• Bug fix for prGetModelVariables affecting model with functions asparameters
• Added poisson (link=log) to the getCrudeAndAdjusted function to retexp() values

Changes for 0.5.3.1

• AddedtransitionPlot ability to indicate proportions inthe rectangles

Changes for 0.5.3.0

• Added the bezier arrows to the transition plot
• Added a bridge option for the transition plot arrows
• Bugfix for the bezierSmplGradient

Changes for 0.5.2.0

• Added the bezier arrows.

Changes for 0.5.1.1

• Added lwd parameters to thetransitionPlot lines
• Changed the transition matrix - the sums were not necessary as theyeasily can be calculated from the rowSums/colSums.

Changes for 0.5.1.0

• Added thetransitionPlot

Changes for 0.5.0.2

• Bugfix forhtmlTable - throws error if a onedimensional x is provided

Changes for 0.5.0.1

• Bugfix for plotHR - there were issues with getting the modeldata
• Added option for having specific digits inprintCrudeAndAdjustedModel in the model and the descriptive part

Changes for 0.5.0.0

• Added the option of having descriptive data to theprintCrudeAndAdjustedModel
• A completely new way to extract the model dataset

Changes for 0.4.9.1

• Change the option for printCrudeAndAdjustedModel from just html tooutput alternatives html, latex or raw
• Altered the name of the describe_ functions to follow the camelCasestyle, i.e. describe_mean is now describeMean

Changes for 0.4.9.0

• Added thegetSvdMostInfluential function

Changes for 0.4.8.2

• The simpleRmsAnovaLatex now has a better handling of the lowp-values
• Fixed a minor but with printCrudeAndAdjusted with the automatedreference

Changes for 0.4.8.2

• Added the option of hadding a total column even in “vertical”mode
• Changed parameter names hrzl_prop.show_perc tototal_col_show_perc
• Bugfix: The total column causes errors if the by contains missingvalues

Changes for 0.4.8.1

• Fixed a few bugs to theforestplot2