Rtapas: Random Tanglegram Partitions
Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See Llaberia-Robledillo et al., (2023) <doi:10.1093/sysbio/syad016>.
| Version: | 1.2 |
| Depends: | phytools, parallel, R (≥ 3.5.0) |
| Imports: | ape,distory,paco,parallelly, stats,stringr,vegan |
| Suggests: | testthat (≥ 3.2.1.1) |
| Published: | 2024-06-13 |
| DOI: | 10.32614/CRAN.package.Rtapas |
| Author: | Mar Llaberia-Robledillo [aut, cre, cph], Juan A. Balbuena [aut, cph], José Ignacio Lucas-Lledó [aut, cph], Oscar Alejandro Pérez-Escobar [aut, cph] |
| Maintainer: | Mar Llaberia-Robledillo <mar.llaberia at uv.es> |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | Rtapas results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=Rtapasto link to this page.