Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen (2018, <doi:10.1101/058107>) and Janzen (2022, <doi:10.1111/1755-0998.13519>).
| Version: | 2.1.3 |
| Depends: | RcppParallel (≥ 5.0.0) |
| Imports: | nloptr,Rcpp,tibble |
| LinkingTo: | nloptr,Rcpp,RcppParallel |
| Suggests: | dplyr,ggplot2,knitr,magrittr,rmarkdown,testthat,tidyr |
| Published: | 2025-04-09 |
| DOI: | 10.32614/CRAN.package.junctions |
| Author: | Thijs Janzen [aut, cre] |
| Maintainer: | Thijs Janzen <thijsjanzen at gmail.com> |
| BugReports: | https://github.com/thijsjanzen/junctions/issues |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://thijsjanzen.github.io/junctions/ |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Citation: | junctions citation info |
| Materials: | README,NEWS |
| CRAN checks: | junctions results |
| Reference manual: | junctions.html ,junctions.pdf |
| Vignettes: | Overview_of_the_junctions_package (source,R code) junctions (source,R code) phasing (source,R code) |
| Package source: | junctions_2.1.3.tar.gz |
| Windows binaries: | r-devel:junctions_2.1.3.zip, r-release:junctions_2.1.3.zip, r-oldrel:junctions_2.1.3.zip |
| macOS binaries: | r-release (arm64):junctions_2.1.3.tgz, r-oldrel (arm64):junctions_2.1.3.tgz, r-release (x86_64):junctions_2.1.3.tgz, r-oldrel (x86_64):junctions_2.1.3.tgz |
| Old sources: | junctions archive |
| Reverse suggests: | GenomeAdmixR |
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