RareComb: Combinatorial and Statistical Analyses of Rare Events
A custom implementation of the apriori algorithm and binomial tests to identify combinations of features (genes, variants etc) significantly enriched for simultaneous mutations/events from sparse Boolean input, see Vijay Kumar Pounraja, Santhosh Girirajan (2021). Version 1.1 includes a minor adjustment to the number of combinations to be considered for multiple testing correction. This updated version is more conservative in its approach and hence more selective. <doi:10.1101/2021.10.01.462832>.
| Version: | 1.1 |
| Depends: | R (≥ 2.10) |
| Imports: | magrittr,arules,dplyr, methods,pwr,stringr,tidyr,reshape2,sqldf |
| Published: | 2022-02-24 |
| DOI: | 10.32614/CRAN.package.RareComb |
| Author: | Vijay Kumar Pounraja [aut, cre] |
| Maintainer: | Vijay Kumar Pounraja <vijaykumar.mp at gmail.com> |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | RareComb results |
Documentation:
| Reference manual: | RareComb.html ,RareComb.pdf |
Downloads:
| Package source: | RareComb_1.1.tar.gz |
| Windows binaries: | r-devel:RareComb_1.1.zip, r-release:RareComb_1.1.zip, r-oldrel:RareComb_1.1.zip |
| macOS binaries: | r-release (arm64):RareComb_1.1.tgz, r-oldrel (arm64):RareComb_1.1.tgz, r-release (x86_64):RareComb_1.1.tgz, r-oldrel (x86_64):RareComb_1.1.tgz |
| Old sources: | RareComb archive |
Linking:
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