pureseqtmr: Predict Transmembrane Protein Topology
Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), <doi:10.1101/627307>), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.
| Version: | 1.4 |
| Depends: | R (≥ 3.5.0) |
| Imports: | data.table,devtools,dplyr,ggplot2,Peptides,plyr,rappdirs,readr,stringr,tibble,Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | testthat,knitr,markdown,rmarkdown,profvis |
| Published: | 2023-04-06 |
| DOI: | 10.32614/CRAN.package.pureseqtmr |
| Author: | Richèl J.C. Bilderbeek [aut, cre] |
| Maintainer: | Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> |
| BugReports: | https://github.com/richelbilderbeek/pureseqtmr/ |
| License: | GPL-3 |
| URL: | https://github.com/richelbilderbeek/pureseqtmr/ |
| NeedsCompilation: | yes |
| SystemRequirements: | PureseqTM(https://github.com/PureseqTM/pureseqTM_package) |
| CRAN checks: | pureseqtmr results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=pureseqtmrto link to this page.