Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
| Version: | 3.7.2 |
| Depends: | R (≥ 4.1.0),ggplot2 |
| Imports: | tidyr,reshape2,magrittr,jointseg,shiny,RCurl,foreach,GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,plyr,data.table,dplyr,doParallel,stringr,rtracklayer,Hmisc |
| Suggests: | knitr,remotes,pwr,ComplexHeatmap,rmarkdown, HiCseg,igraph,visNetwork,circlize,plotly,InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,shinythemes,shinycssloaders,DT,logging,heatmaply,S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie |
| Published: | 2022-03-30 |
| DOI: | 10.32614/CRAN.package.CNVScope |
| Author: | James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer |
| Maintainer: | James Dalgleish <james.dalgleish at nih.gov> |
| BugReports: | https://github.com/jamesdalg/CNVScope/issues/ |
| License: | BSD_3_clause + fileLICENSE |
| URL: | https://github.com/jamesdalg/CNVScope/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | CNVScope results |
| Package source: | CNVScope_3.7.2.tar.gz |
| Windows binaries: | r-devel:CNVScope_3.7.2.zip, r-release:CNVScope_3.7.2.zip, r-oldrel:CNVScope_3.7.2.zip |
| macOS binaries: | r-release (arm64):CNVScope_3.7.2.tgz, r-oldrel (arm64):CNVScope_3.7.2.tgz, r-release (x86_64):CNVScope_3.7.2.tgz, r-oldrel (x86_64):CNVScope_3.7.2.tgz |
| Old sources: | CNVScope archive |
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