jSDM: Joint Species Distribution Models
Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton and al. 2015 <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in 'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.
| Version: | 0.2.7 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 1.0.0), graphics, stats,coda,corrplot,stringi,MASS, parallel,doParallel,foreach, methods |
| LinkingTo: | Rcpp,RcppArmadillo,RcppGSL |
| Suggests: | knitr,kableExtra,terra,dplyr,rmarkdown,bookdown,testthat (≥ 3.0.0),boral,Hmsc,ggplot2,covr,ape,gstat |
| Published: | 2025-11-03 |
| DOI: | 10.32614/CRAN.package.jSDM |
| Author: | Ghislain Vieilledent [aut, cre], Jeanne Clément [aut], Frédéric Gosselin [ctb], CIRAD [cph, fnd] |
| Maintainer: | Ghislain Vieilledent <ghislain.vieilledent at cirad.fr> |
| BugReports: | https://github.com/ghislainv/jSDM/issues |
| License: | GPL-3 |
| URL: | https://ecology.ghislainv.fr/jSDM/,https://github.com/ghislainv/jSDM |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU GSL |
| Materials: | README,NEWS |
| CRAN checks: | jSDM results |
Documentation:
| Reference manual: | jSDM.html ,jSDM.pdf |
| Vignettes: | Get started with jSDM (source,R code) Bayesian inference methods (source,R code) |
Downloads:
| Package source: | jSDM_0.2.7.tar.gz |
| Windows binaries: | r-devel:jSDM_0.2.7.zip, r-release:jSDM_0.2.7.zip, r-oldrel:jSDM_0.2.7.zip |
| macOS binaries: | r-release (arm64):jSDM_0.2.7.tgz, r-oldrel (arm64):jSDM_0.2.7.tgz, r-release (x86_64):jSDM_0.2.7.tgz, r-oldrel (x86_64):jSDM_0.2.7.tgz |
| Old sources: | jSDM archive |
Linking:
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