gwid: Genome-Wide Identity-by-Descent
Methods and tools for the analysis of Genome Wide Identity-by-Descent ('gwid') mapping data, focusing on testing whether there is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants in cases compared to controls, which is crucial for identifying rare variants. To enhance its analytical power, 'gwid' incorporates a Sliding Window Approach, allowing for the detection and analysis of signals from multiple Single Nucleotide Polymorphisms (SNPs).
| Version: | 0.3.0 |
| Imports: | data.table,gdsfmt,SNPRelate,Matrix,ggplot2,plotly, utils, stats,RcppRoll, methods,piggyback,shiny,lattice, grid |
| Suggests: | knitr,magrittr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2024-09-03 |
| DOI: | 10.32614/CRAN.package.gwid |
| Author: | Soroush Mahmoudiandehkordi [aut, cre], Steven J Schrodi [aut], Mehdi Maadooliat [aut] |
| Maintainer: | Soroush Mahmoudiandehkordi <soroushmdg at gmail.com> |
| BugReports: | https://github.com/soroushmdg/gwid/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/soroushmdg/gwid,https://soroushmdg.github.io/gwid/ |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | gwid results |
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