treefit: The First Software for Quantitative Trajectory Inference
Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.
| Version: | 1.0.3 |
| Imports: | ggplot2,igraph,patchwork,pracma |
| Suggests: | Seurat,gridExtra,knitr,plotly,qpdf,rmarkdown,testthat |
| Published: | 2025-02-09 |
| DOI: | 10.32614/CRAN.package.treefit |
| Author: | Momoko Hayamizu [aut], Kouhei Sutou [aut, cre], Ryohei Suzuki [aut], Hiromi Ishii [aut] |
| Maintainer: | Kouhei Sutou <kou at clear-code.com> |
| BugReports: | https://github.com/hayamizu-lab/treefit-r/issues |
| License: | GPL (≥ 3) |
| URL: | https://hayamizu-lab.github.io/treefit-r/,https://github.com/hayamizu-lab/treefit-r/ |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README,NEWS |
| In views: | Omics |
| CRAN checks: | treefit results |
Documentation:
| Reference manual: | treefit.html ,treefit.pdf |
| Vignettes: | Treefit - Getting started (source,R code) Treefit - Working with Seurat (source,R code) |
Downloads:
| Package source: | treefit_1.0.3.tar.gz |
| Windows binaries: | r-devel:treefit_1.0.3.zip, r-release:treefit_1.0.3.zip, r-oldrel:treefit_1.0.3.zip |
| macOS binaries: | r-release (arm64):treefit_1.0.3.tgz, r-oldrel (arm64):treefit_1.0.3.tgz, r-release (x86_64):treefit_1.0.3.tgz, r-oldrel (x86_64):treefit_1.0.3.tgz |
| Old sources: | treefit archive |
Linking:
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