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Grouphmap: 'Grouphmap' is an Automated One-Step Common Analysis of BatchExpression Profile

The 'Grouphmap' was implemented in R, an open-source programming environment, and was released under the provided website. The difference analysis is based on the 'limma' package, which can cover gene and protein expression profiles (Reference: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu , Charity W Law , Wei Shi , Gordon K Smyth (2015) <doi:10.1093/nar/gkv007>). The GO enrichment analysis is based on the 'clusterProfiler' package and supports three common species: human, mouse, and yeast (Reference: Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He (2012) <doi:10.1089/omi.2011.0118>). The results of batch difference analysis and enrichment analysis are output in separate folders for easy viewing and further visualization of the results during the process. The results returned a heatmap in R and exported to 3 folders named DEG, go, and merge.

Version:1.0.0
Depends:R (≥ 4.2.0)
Imports:limma,clusterProfiler,dplyr,org.Mm.eg.db,pheatmap,stringr, stats, utils, grDevices
Published:2023-09-04
DOI:10.32614/CRAN.package.Grouphmap
Author:Yuchen Sun [aut, cre]
Maintainer:Yuchen Sun <yuchensun2436 at 163.com>
License:Artistic-2.0
NeedsCompilation:no
CRAN checks:Grouphmap results

Documentation:

Reference manual:Grouphmap.html ,Grouphmap.pdf

Downloads:

Package source: Grouphmap_1.0.0.tar.gz
Windows binaries: r-devel:Grouphmap_1.0.0.zip, r-release:Grouphmap_1.0.0.zip, r-oldrel:Grouphmap_1.0.0.zip
macOS binaries: r-release (arm64):Grouphmap_1.0.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64):Grouphmap_1.0.0.tgz

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=Grouphmapto link to this page.


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