mxfda: A Functional Data Analysis Package for Spatial Single Cell Data
Methods and tools for deriving spatial summary functions from single-cell imaging data and performing functional data analyses. Functions can be applied to other single-cell technologies such as spatial transcriptomics. Functional regression and functional principal component analysis methods are in the 'refund' package <https://cran.r-project.org/package=refund> while calculation of the spatial summary functions are from the 'spatstat' package <https://spatstat.org/>.
| Version: | 0.2.2-1 |
| Depends: | R (≥ 2.10) |
| Imports: | magrittr,rlang,tidyr,purrr,dplyr,ggplot2,lifecycle, methods, stats,refund (≥ 0.1-35),reshape2,mgcv,spatstat.geom,spatstat.explore,SpatEntropy,SimDesign |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0),tidyverse,survival,ggpubr,spatialTIME,tibble,broom,refund.shiny,Seurat,SeuratObject |
| Published: | 2025-02-19 |
| DOI: | 10.32614/CRAN.package.mxfda |
| Author: | Julia Wrobel [aut], Alex Soupir [aut, cre] |
| Maintainer: | Alex Soupir <alex.soupir at moffitt.org> |
| BugReports: | https://github.com/julia-wrobel/mxfda/issues/ |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/julia-wrobel/mxfda/,http://juliawrobel.com/mxfda/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | mxfda results |
Documentation:
Downloads:
| Package source: | mxfda_0.2.2-1.tar.gz |
| Windows binaries: | r-devel:mxfda_0.2.2-1.zip, r-release:mxfda_0.2.2-1.zip, r-oldrel:mxfda_0.2.2-1.zip |
| macOS binaries: | r-release (arm64):mxfda_0.2.2-1.tgz, r-oldrel (arm64):mxfda_0.2.2-1.tgz, r-release (x86_64):mxfda_0.2.2-1.tgz, r-oldrel (x86_64):mxfda_0.2.2-1.tgz |
| Old sources: | mxfda archive |
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