Movatterモバイル変換

QurvE: Robust and User-Friendly Analysis of Growth and FluorescenceCurves

High-throughput analysis of growth curves and fluorescence data using three methods: linear regression, growth model fitting, and smooth spline fit. Analysis of dose-response relationships via smoothing splines or dose-response models. Complete data analysis workflows can be executed in a single step via user-friendly wrapper functions. The results of these workflows are summarized in detailed reports as well as intuitively navigable 'R' data containers. A 'shiny' application provides access to all features without requiring any programming knowledge. The package is described in further detail in Wirth et al. (2023) <doi:10.1038/s41596-023-00850-7>.

Version:	1.1.2
Depends:	dplyr, methods, R (≥ 4.0),stringr,tidyr
Imports:	doParallel,drc,DT,foreach,ggh4x,ggnewscale,ggplot2,ggpubr,kableExtra,knitr,labeling,magrittr,minpack.lm,plyr,purrr,RColorBrewer,readxl,rmarkdown,scales,shiny, stats, utils
Suggests:	bookdown,Cairo,htmltools,plotrix,prettydoc,rlang,shinyBS,shinycssloaders,shinyFiles,shinyjs,shinythemes,testthat (≥ 3.0.0),tibble,tinytex
Published:	2025-09-19
DOI:	10.32614/CRAN.package.QurvE
Author:	Nicolas T. Wirth [aut, cre, cph], Jonathan Funk [aut] (contribution: Co-developer of shiny app.), Matthias Kahm [ctb] (contribution: Author of 'grofit' package, whose general data structure was adopted for QurvE.), Maik Kschischo [ctb] (contribution: Author of 'grofit' package, whose general data structure was adopted for QurvE.), Thomas Petzoldt [ctb] (contribution: Creator of the package 'growthrates', whose function for calculating linear regressions served as a template in QurvE.), Andrew Stein [ctb] (contribution: Creator of 'xgxr' package from which QurvE adopted code to plot axis ticks on log10 scale.), Michael W. Kearney [ctb] (contribution: Creator of 'tfse' package from which QurvE adopted the match_arg function.), Santiago I. Hurtado [ctb] (contribution: Creator of 'RobustLinearReg' package from which QurvE adopted the Theil Sehn Regression method.), Mark Heckmann [ctb] (contribution: Creator of the 'zipFastener' function; source: https://ryouready.wordpress.com/2009/03/27/r-zip-fastener-for-two-data-frames-combining-rows-or-columns-of-two-dataframes-in-an-alternating-manner/), Nicholas Hamilton [ctb] (contribution: Creator of the 'colFmt' function.), Evan Friedland [ctb] (contribution: Creator of the 'inflect' function.), Heather Turner [ctb] (contribution: Creator of the 'base_breaks' function.), Georgi N. Boshnakov [ctb] (contribution: Creator of 'gbRd' package from which functions are used to display function help pages within the shiny app.)
Maintainer:	Nicolas T. Wirth <mail.nicowirth at gmail.com>
BugReports:	https://github.com/NicWir/QurvE/issues
License:	GPL (≥ 3)
URL:	https://github.com/NicWir/QurvE,https://nicwir.github.io/QurvE/
NeedsCompilation:	no
Materials:	NEWS
CRAN checks:	QurvE results

Documentation:

Downloads:

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=QurvEto link to this page.