Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
| Version: | 2.8 |
| Depends: | ape,nloptr,GenSA |
| Imports: | expm,numDeriv,corpcor,MASS,nnet,phangorn, parallel,viridis,Rmpfr,igraph,phytools |
| Suggests: | testthat,knitr,rmarkdown |
| Published: | 2022-06-13 |
| DOI: | 10.32614/CRAN.package.corHMM |
| Author: | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut] |
| Maintainer: | Jeremy Beaulieu <jmbeauli at uark.edu> |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| In views: | Phylogenetics |
| CRAN checks: | corHMM results |