Movatterモバイル変換


[0]ホーム

URL:


NMF: Algorithms and Framework for Nonnegative Matrix Factorization(NMF)

Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.

Version:0.28
Depends:R (≥ 3.0.0), methods, utils,registry,rngtools (≥ 1.2.3),cluster
Imports:graphics, stats,stringr (≥ 1.0.0),digest, grid, grDevices,gridBase,colorspace,RColorBrewer,foreach,doParallel,ggplot2,reshape2,Biobase,codetools,BiocManager
Suggests:fastICA,doMPI,bigmemory (≥ 4.2),synchronicity (≥ 1.3.2),corpcor,xtable,devtools,knitr,RUnit
Published:2024-08-22
DOI:10.32614/CRAN.package.NMF
Author:Renaud Gaujoux [aut], Cathal Seoighe [aut], Nicolas Sauwen [cre]
Maintainer:Nicolas Sauwen <nicolas.sauwen at openanalytics.eu>
License:GPL-2 |GPL-3 [expanded from: GPL (≥ 2)]
URL:http://renozao.github.io/NMF/
NeedsCompilation:yes
Citation:NMF citation info
Materials:README,NEWS
CRAN checks:NMF results

Documentation:

Reference manual:NMF.html ,NMF.pdf
Vignettes:An introduction to the package NMF (source,R code)
NMF: generating heatmaps (source,R code)

Downloads:

Package source: NMF_0.28.tar.gz
Windows binaries: r-devel:NMF_0.28.zip, r-release:NMF_0.28.zip, r-oldrel:NMF_0.28.zip
macOS binaries: r-release (arm64):NMF_0.28.tgz, r-oldrel (arm64):NMF_0.28.tgz, r-release (x86_64):NMF_0.28.tgz, r-oldrel (x86_64):NMF_0.28.tgz
Old sources: NMF archive

Reverse dependencies:

Reverse depends:fabisearch,funOmics,InterSIM,IntNMF,musicatk,MutationalPatterns,signeR,SomaticSignatures,SparseSignatures
Reverse imports:CARDspa,clusterExperiment,DBNMFrank,funOmics,hNMF,MetabolSSMF,miRSM,pcaExplorer,projectR,SCdeconR,scITD,shattering,sigminer,SomaticSignatures,SpNMF
Reverse suggests:AUCell,CimpleG,cola,crassmat,diceR,dimRed,Evacluster,iTOP,looking4clusters,maftools,MAST,mia,mlr3pipelines,scone
Reverse enhances:fdm2id

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=NMFto link to this page.


[8]ページ先頭

©2009-2025 Movatter.jp