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MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis

Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' R packages. It helps to build reproducible and robust bioinformatics pipelines in R. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.

Version:	0.14.4
Depends:	R (≥ 4.1.0),phyloseq,ggplot2 (≥ 3.5.0),dada2,dplyr,purrr
Imports:	ape,lifecycle,rlang, stats
Suggests:	adespatial,ANCOMBC,BiocManager,Biostrings,circlize,ComplexUpset,DECIPHER,DESeq2,devtools,DT,edgeR,formattable,ggalluvial,ggfittext, gghalves,ggh4x,ggnetwork,ggstatsplot,ggridges,ggVennDiagram,glmulti,gtsummary, grDevices, grid,gridExtra,here,httr,igraph,iNEXT,indicspecies,IRanges,jsonlite,knitr,magrittr, methods,mia,mixtools,multcompView,networkD3,pak,patchwork,pbapply,permute,phangorn,phyloseqGraphTest,pkgnet,plotly,plyr,reshape2,rmarkdown,rotl,Rtsne,scales,seqinr,SRS,stringr,SummarizedExperiment,testthat (≥ 3.0.0),tibble,tidyr,treemapify,umap,uwot,vegan,venneuler,vctrs,viridis,withr,spelling
Published:	2025-09-30
DOI:	10.32614/CRAN.package.MiscMetabar
Author:	Adrien Taudière [aut, cre, cph]
Maintainer:	Adrien Taudière <adrien.taudiere at zaclys.net>
BugReports:	https://github.com/adrientaudiere/MiscMetabar/issues
License:	AGPL-3
URL:	https://github.com/adrientaudiere/MiscMetabar,https://adrientaudiere.github.io/MiscMetabar/
NeedsCompilation:	no
Language:	en-US
Materials:	README,NEWS
CRAN checks:	MiscMetabar results

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