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POINT: Protein Structure Guided Local Test

Provides an implementation of a rare variant association test that utilizes protein tertiary structure to increase signal and to identify likely causal variants. Performs structure-guided collapsing, which leads to local tests that borrow information from neighboring variants on a protein and that provide association information on a variant-specific level. For details of the implemented method see West, R. M., Lu, W., Rotroff, D. M., Kuenemann, M., Chang, S-M., Wagner M. J., Buse, J. B., Motsinger-Reif, A., Fourches, D., and Tzeng, J-Y. (2019) <doi:10.1371/journal.pcbi.1006722>.

Version:1.4
Depends:methods, stats,rARPACK,Matrix,CompQuadForm
Published:2025-05-04
DOI:10.32614/CRAN.package.POINT
Author:Rachel Marceau West [aut], Shannon T. Holloway [aut, cre]
Maintainer:Shannon T. Holloway <shannon.t.holloway at gmail.com>
License:GPL-2
NeedsCompilation:no
Materials:NEWS
CRAN checks:POINT results

Documentation:

Reference manual:POINT.html ,POINT.pdf

Downloads:

Package source: POINT_1.4.tar.gz
Windows binaries: r-devel:POINT_1.4.zip, r-release:POINT_1.4.zip, r-oldrel:POINT_1.4.zip
macOS binaries: r-release (arm64):POINT_1.4.tgz, r-oldrel (arm64):POINT_1.4.tgz, r-release (x86_64):POINT_1.4.tgz, r-oldrel (x86_64):POINT_1.4.tgz
Old sources: POINT archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=POINTto link to this page.


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