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vegan: Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

Version:	2.6-10
Depends:	permute (≥ 0.9-0),lattice, R (≥ 4.1.0)
Imports:	MASS,cluster,mgcv
Suggests:	parallel, tcltk,knitr,markdown
Published:	2025-01-29
DOI:	10.32614/CRAN.package.vegan
Author:	Jari Oksanen [aut, cre], Gavin L. Simpson [aut], F. Guillaume Blanchet [aut], Roeland Kindt [aut], Pierre Legendre [aut], Peter R. Minchin [aut], R.B. O'Hara [aut], Peter Solymos [aut], M. Henry H. Stevens [aut], Eduard Szoecs [aut], Helene Wagner [aut], Matt Barbour [aut], Michael Bedward [aut], Ben Bolker [aut], Daniel Borcard [aut], Gustavo Carvalho [aut], Michael Chirico [aut], Miquel De Caceres [aut], Sebastien Durand [aut], Heloisa Beatriz Antoniazi Evangelista [aut], Rich FitzJohn [aut], Michael Friendly [aut], Brendan Furneaux [aut], Geoffrey Hannigan [aut], Mark O. Hill [aut], Leo Lahti [aut], Dan McGlinn [aut], Marie-Helene Ouellette [aut], Eduardo Ribeiro Cunha [aut], Tyler Smith [aut], Adrian Stier [aut], Cajo J.F. Ter Braak [aut], James Weedon [aut], Tuomas Borman [aut]
Maintainer:	Jari Oksanen <jhoksane at gmail.com>
BugReports:	https://github.com/vegandevs/vegan/issues
License:	GPL-2
URL:	https://github.com/vegandevs/vegan
NeedsCompilation:	yes
Materials:	NEWS
In views:	Environmetrics,Phylogenetics,Psychometrics,Spatial
CRAN checks:	vegan results

Documentation:

Reference manual:	vegan.pdf
Vignettes:	Design decisions and implementation (source,R code) Diversity analysis in vegan (source,R code) Introduction to ordination in vegan (source,R code) Partition of Variation (source,R code) vegan FAQ (source,R code)

Downloads:

Package source:	vegan_2.6-10.tar.gz
Windows binaries:	r-devel:vegan_2.6-10.zip, r-release:vegan_2.6-10.zip, r-oldrel:vegan_2.6-10.zip
macOS binaries:	r-devel (arm64):vegan_2.6-10.tgz, r-release (arm64):vegan_2.6-10.tgz, r-oldrel (arm64):vegan_2.6-10.tgz, r-devel (x86_64):vegan_2.6-10.tgz, r-release (x86_64):vegan_2.6-10.tgz, r-oldrel (x86_64):vegan_2.6-10.tgz
Old sources:	vegan archive

Reverse dependencies:

Reverse depends:	analogue,BBI,betaper,BiodiversityR,bipartite,blender,cocorresp,CommEcol,diathor,EcoIndR,FD,FreeSortR,ggordiplots,glmm.hp,KnowBR,metacom,MiSPU,mpmcorrelogram,octopucs,ordiBreadth,OTUbase,phylolm.hp,picante,rareNMtests,rdacca.hp,segRDA,SRS,vegan3d
Reverse imports:	abseqR,adegenet,adespatial,aIc,AICcPermanova,AlleleShift,animalcules,aPCoA,Arothron,ausplotsR,barcodetrackR,BAT,bingat,BioTIMEr,CAGEr,canaper,cassandRa,cati,chemodiv,cml,CNVRG,codyn,combi,comsimitv,CoreMicrobiomeR,DarkDiv,dartR.spatial,dilp,DIscBIO,dispRity,divent,divvy,douconca,dynRB,easyCODA,ecan,ecocbo,ecospat,EcotoneFinder,enmpa,entropart,EvaluateCore,evolqg,flowCHIC,flowCyBar,forams,fundiversity,funspace,GABB,ggtaxplot,GOCompare,goeveg,GPA,graph4lg,grapherator,GRNNs,GUniFrac,HMP,HybridMicrobiomes,iCAMP,isopam,knfi,LDM,LinkHD,Linnorm,LorMe,Maaslin2,MBECS,mcMST,MEAL,MEclustnet,memgene,metacoder,metrix,mFD,mia,microbial,microbiome,microbiomeExplorer,microbiomeMarker,microbiomeMQC,MicrobiotaProcess,microeco,mirt,mixKernel,mixtree,mobsim,Momocs,MorphoTools2,MultiTraits,NADA2,naturaList,neonPlantEcology,netassoc,netcom,netZooR,NicheBarcoding,node2vec,nodiv,NST,omicplotR,paco,palaeoSig,paleoAM,pathlinkR,PathoStat,patternize,PCPS,pctax,pez,phyloregion,phyloseq,phylospatial,PIUMA,PLSDAbatch,PolicyPortfolios,POMA,PopGenReport,poppr,powerTCR,ProjectionBasedClustering,PRONE,ProtE,QFASA,RaceID,rbiom,recluster,RHC,rioja,RPANDA,Rtapas,RTCC,RVAideMemoire,RVenn,seriation,shapeR,SigTree,smacofx,smartsnp,soundecology,spaceNet,SparseLPM,spmoran,SSP,stops,supportR,surveyvoi,SYNCSA,synergyfinder,tapnet,TaxaNorm,Toothnroll,TraMineR,tripr,tspmeta,vcfR,vegclust,visvow,Xplortext,zetadiv
Reverse suggests:	abdiv,betapart,biosampleR,bipartiteD3,bluster,curatedMetagenomicData,dartR,dissCqN,divDyn,ecolottery,ecoregime,ecospace,ecostats,ecotraj,eHOF,enveomics.R,epiphy,GCalignR,hagis,HDANOVA,idar,interactiveDisplay,ISAnalytics,iSEEtree,LegATo,mefa,metagenomeSeq,MetaNet,MGnifyR,miaSim,miaViz,MiRKAT,MiscMetabar,MMUPHin,multiWGCNA,ordr,pcutils,permute,phylotools,Platypus,primer,ProcMod,pRoloc,PtH2O2lipids,raptr,ReporterScore,restoptr,Rraven,RRphylo,sads,shipunov,SoundShape,spaa,SQMtools,taxize,tidypaleo,ulrb,vegdata,vegtable,WeightedCluster,yaImpute
Reverse enhances:	labdsv

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